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Config

helical.models.mamba2_mrna.Mamba2mRNAConfig

Mamba2-mRNA Config class to store the configuration of the Mamba2-mRNA model.

Parameters:

Name Type Description Default
batch_size int

The batch size

 10
device Literal['cpu', 'cuda']

The device to use. Either use "cuda" or "cpu".

 "cpu"
max_length int

The maximum length of the input sequence. It is recommeded to set this to the longest sequence in the dataset.

 8192
nproc int

Number of processes to use for data processing.

 1
Source code in helical/models/mamba2_mrna/mamba2_mrna_config.py 
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class Mamba2mRNAConfig:
    """Mamba2-mRNA Config class to store the configuration of the Mamba2-mRNA model.

    Parameters
    ----------
    batch_size : int, optional, default=10
        The batch size
    device : Literal["cpu", "cuda"], optional, default="cpu"
        The device to use. Either use "cuda" or "cpu".
    max_length : int, optional, default=8192
        The maximum length of the input sequence. It is recommeded to set this to the longest sequence in the dataset.
    nproc: int, optional, default=1
        Number of processes to use for data processing.
    """

    def __init__(
        self,
        batch_size: int = 10,
        device: Literal["cpu", "cuda"] = "cpu",
        max_length: int = 8192,
        nproc: int = 1,
    ):

        model_name = "helical-ai/mamba2-mRNA"

        self.config = {
            "model_name": model_name,
            "batch_size": batch_size,
            "input_size": max_length,
            "device": device,
            "nproc": nproc,
        }